Job Description
Title: Genomics/ Bioinformatics Pipeline Engineer ( Sr. Software Engineer) Duration: 1 Year
Remote
This position will be in Genomics Pipeline area, Python, R, BASH, Linux/Unix scripting languages. Genomics Pipeline Area: Required: -Knowledge of Python, BASH, and other scripting and Linux/Unix tools. -Knowledge of bioinformatics applications and tools and pipelines such as Illumina BCL Conversion, Genomic Aligners and Variant callers such as GATK or Sentieon. -Demonstrated ability to learn new scripting languages and tools quickly -Knowledge of Nextflow or other pipeline management software.
Preferred: -Previous knowledge of Genetics software pipelines and tooling for the laboratories -Must possess excellent analytical, problem-solving, and technical design skills. -Must have knowledge of system architecture and design principles, software development methodologies, and computer programming. -Must be willing to work in an Agile team environment as well as being comfortable working independently with minimal supervision -Experience with clustered/distributed environments using Oracle Grid Engine is highly desirable.
-Familiarity with cloud integration CLI tooling such as awscli, gcloud, and azurecli is a plus. -Candidate with genomics domain expertise and some exposure to clinical or research laboratory work and equipment are highly desirable Required qualifications for this position include: Bachelor's Degree in Computer Science/Engineering or related field with 5 years of experience as noted below; OR an Associate's degree in Computer/Science/Engineering or related field with 7 years of experience Apply tot his job